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ASmiR Selection

miRNA target sites locating at the linear mRNA AS regions of Arabidopsis

Total 3860 records in 129 Pages. Current page: 1
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  • IDMiRnameScoreTarASregionGenomicSiteTarGeneStrandAStypeTarSeqmiRNASeqSoftwareSequence Description
    1
    ath-miR414
    2.8
    chr03:3942708-3942728|miR414|chr03:3942658-3942742
    AT3G12390
    +
    ExonS
    Query:1TCATCTTCATCATCATCGTCA21
    | | | | | : | * | | | | | | * | | : | | |
    Sbjct:71AGTAGGAATAGTAGCAGTAGT51
    TCATCTTCATCATCATCGTCA
    psRobot
    AT3G12390|T2E22
    2
    ath-miR414
    2.8
    chr03:3942708-3942728|miR414|chr03:3942667-3942742
    AT3G12390
    +
    ExonS
    Query:1TCATCTTCATCATCATCGTCA21
    | | | | | : | * | | | | | | * | | : | | |
    Sbjct:62AGTAGGAATAGTAGCAGTAGT42
    TCATCTTCATCATCATCGTCA
    psRobot
    AT3G12390|T2E22
    3
    ath-miR164b-3p
    3.0
    chr03:19611238-19611258|miR164b-3p|chr03:19611200-
    AT3G52890
    +
    IntronR
    Query:1CATGTGCCCATCTTCACCATC21
    * | | | | | * | | | | | | | | | | * * * |
    Sbjct:59TTACACAGGTAGAAGTGCCTG39
    CATGTGCCCATCTTCACCATC
    psRobot
    AT3G52890|KIPK|KCBP-interacting protein kinase|F8J2
    4
    ath-miR860
    3.0
    chr05:3554108-3554127|miR860|chr05:3554101-3554236
    AT5G11170
    +
    AltA
    Query:1TCAATAGATTGGACTATGTAT21
    : | | | | | | | | | | : | * | | | * : * |
    Sbjct:27GGTTATCTAACTTTATA-GCA8
    TCAATAGATTGGACTATGTAT
    psRobot
    AT5G11170|UAP56a|homolog of human UAP56 a|F2I11
    5
    ath-miR860
    3.0
    chr05:3554108-3554127|miR860|chr05:3554101-3554171
    AT5G11170
    +
    AltA
    Query:1TCAATAGATTGGACTATGTAT21
    : | | | | | | | | | | : | * | | | * : * |
    Sbjct:27GGTTATCTAACTTTATA-GCA8
    TCAATAGATTGGACTATGTAT
    psRobot
    AT5G11170|UAP56a|homolog of human UAP56 a|F2I11
    6
    ath-miR156j
    3.0
    chr04:8433371-8433390|miR156j|chr04:8433194-843346
    AT4G14720
    -
    AltD
    Query:1TGACAGAAGAGAGAGAGCAC20
    | | | | | * | | | | : | | | : | | * | *
    Sbjct:197ACTGTATTCTTTCTTTCTTT178
    TGACAGAAGAGAGAGAGCAC
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    7
    ath-miR156j
    3.0
    chr04:8433218-8433237|miR156j|chr04:8433194-843331
    AT4G14720
    -
    ExonS
    Query:1TGACAGAAGAGAGAGAGCAC20
    | | | | | * | | | | : | | | : | | * | *
    Sbjct:44ACTGTATTCTTTCTTTCTTT25
    TGACAGAAGAGAGAGAGCAC
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    8
    ath-miR156j
    3.0
    chr04:1869192-1869210|miR156j|chr04:1868942-186927
    AT4G03935
    -
    IntronR
    Query:1TGACAGAAGAGAGAGAGCAC20
    * | | * | | | | | | | | | | | | * | | *
    Sbjct:269TCTTTCTTCTCTCTCT-GTT251
    TGACAGAAGAGAGAGAGCAC
    psRobot
    AT4G03935
    9
    ath-miR156j
    3.0
    chr04:8433326-8433345|miR156j|chr04:8433194-843341
    AT4G14720
    -
    AltD
    Query:1TGACAGAAGAGAGAGAGCAC20
    | | | | | * | | | | : | | | : | | * | *
    Sbjct:152ACTGTATTCTTTCTTTCTTT133
    TGACAGAAGAGAGAGAGCAC
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    10
    ath-miR156j
    3.0
    chr04:1869007-1869025|miR156j|chr04:1868942-186908
    AT4G03935
    -
    IntronR
    Query:1TGACAGAAGAGAGAGAGCAC20
    * | | * | | | | | | | | | | | | * | | *
    Sbjct:84TCTTTCTTCTCTCTCT-GTT66
    TGACAGAAGAGAGAGAGCAC
    psRobot
    AT4G03935
    11
    ath-miR5658
    1.5
    chr02:12942039-12942060|miR5658|chr02:12941990-129
    AT2G30370
    -
    ExonS
    Query:1ATGATGATGATGATGATGA-AA21
    | | | | | | | | | | | : | | : | | | | * | |
    Sbjct:71TACTACTACTATTATTACTATT50
    ATGATGATGATGATGATGA-AA
    psRobot
    AT2G30370|CHAL|EPFL6|AtEPFL6|CHALLAH|EPF1-like 6|T9D9
    12
    ath-miR5021
    3.0
    chr04:11401658-11401677|miR5021|chr04:11401610-114
    AT4G21400
    -
    AltA
    Query:1TGAGAAGAAGAAGAAGAAAA20
    * | * : | | | | | | | | : | | | | * | |
    Sbjct:68TCGTTTCTTCTTTTTCTATT49
    TGAGAAGAAGAAGAAGAAAA
    psRobot
    AT4G21400|CRK28|cysteine-rich RLK (RECEPTOR-like protein kinase) 28|F18E5
    13
    ath-miR5021
    3.0
    chr05:8428494-8428513|miR5021|chr05:8428410-842852
    AT5G24610
    +
    AltA
    Query:1TGAGAAGAAGAAGAAGAAAA20
    * : | | * * | | | | | | | | | | | | | |
    Sbjct:104TTTCGGCTTCTTCTTCTTTT85
    TGAGAAGAAGAAGAAGAAAA
    psRobot
    AT5G24610|K18P6
    14
    ath-miR5021
    3.0
    chr05:8428494-8428513|miR5021|chr05:8428410-842858
    AT5G24610
    +
    ExonS
    Query:1TGAGAAGAAGAAGAAGAAAA20
    * : | | * * | | | | | | | | | | | | | |
    Sbjct:104TTTCGGCTTCTTCTTCTTTT85
    TGAGAAGAAGAAGAAGAAAA
    psRobot
    AT5G24610|K18P6
    15
    ath-miR5021
    3.0
    chr05:24660265-24660284|miR5021|chr05:24660213-246
    AT5G61330
    -
    AltD
    Query:1TGAGAAGAAGAAGAAGAAAA20
    | : | : | | : | | : | | : | | : | | | |
    Sbjct:72ATTTTTTTTTTTTTTTTTTT53
    TGAGAAGAAGAAGAAGAAAA
    psRobot
    AT5G61330|MFB13
    16
    ath-miR5021
    3.0
    chr05:24660236-24660255|miR5021|chr05:24660213-246
    AT5G61330
    -
    AltD
    Query:1TGAGAAGAAGAAGAAGAAAA20
    | : | : | | : | | : | | : | | : | | | |
    Sbjct:43ATTTTTTTTTTTTTTTTTTT24
    TGAGAAGAAGAAGAAGAAAA
    psRobot
    AT5G61330|MFB13
    17
    ath-miR5021
    3.0
    chr03:21445285-21445304|miR5021|chr03:21445277-214
    AT3G57920
    -
    IntronR
    Query:1TGAGAAGAAGAAGAAGAAAA20
    | : | : | * | | | | | | | | | : | | | *
    Sbjct:28ATTTTCCTTCTTCTTTTTTC9
    TGAGAAGAAGAAGAAGAAAA
    psRobot
    AT3G57920|SPL15|squamosa promoter binding protein-like 15|T10K17
    18
    ath-miR5021
    3.0
    chr03:572155-572175|miR5021|chr03:572142-572279
    AT3G02660
    -
    AltD
    Query:1TGAGAAGAAGAAGAAGAA-AA20
    * : | | | | | | | | | | | | * | | * * | |
    Sbjct:34CTTCTTCTTCTTCTACTACTT14
    TGAGAAGAAGAAGAAGAA-AA
    psRobot
    AT3G02660|EMB2768|FAC31|EMBRYO DEFECTIVE 2768|EMBRYONIC FACTOR 31|F16B3
    19
    ath-miR156h
    2.5
    chr04:8433371-8433390|miR156h|chr04:8433194-843346
    AT4G14720
    -
    AltD
    Query:1TGACAGAAGAAAGAGAGCAC20
    | | | | | * | | | | | | | | : | | * | *
    Sbjct:197ACTGTATTCTTTCTTTCTTT178
    TGACAGAAGAAAGAGAGCAC
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    20
    ath-miR156h
    2.5
    chr04:8433218-8433237|miR156h|chr04:8433194-843331
    AT4G14720
    -
    ExonS
    Query:1TGACAGAAGAAAGAGAGCAC20
    | | | | | * | | | | | | | | : | | * | *
    Sbjct:44ACTGTATTCTTTCTTTCTTT25
    TGACAGAAGAAAGAGAGCAC
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    21
    ath-miR156h
    2.5
    chr04:8433326-8433345|miR156h|chr04:8433194-843341
    AT4G14720
    -
    AltD
    Query:1TGACAGAAGAAAGAGAGCAC20
    | | | | | * | | | | | | | | : | | * | *
    Sbjct:152ACTGTATTCTTTCTTTCTTT133
    TGACAGAAGAAAGAGAGCAC
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    22
    ath-miR156i
    2.8
    chr04:8433371-8433390|miR156i|chr04:8433194-843346
    AT4G14720
    -
    AltD
    Query:1TGACAGAAGAGAGAGAGCAG20
    | | | | | * | | | | : | | | : | | * | :
    Sbjct:197ACTGTATTCTTTCTTTCTTT178
    TGACAGAAGAGAGAGAGCAG
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    23
    ath-miR156i
    2.8
    chr04:8433218-8433237|miR156i|chr04:8433194-843331
    AT4G14720
    -
    ExonS
    Query:1TGACAGAAGAGAGAGAGCAG20
    | | | | | * | | | | : | | | : | | * | :
    Sbjct:44ACTGTATTCTTTCTTTCTTT25
    TGACAGAAGAGAGAGAGCAG
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    24
    ath-miR156i
    2.8
    chr04:1869192-1869210|miR156i|chr04:1868942-186927
    AT4G03935
    -
    IntronR
    Query:1TGACAGAAGAGAGAGAGCAG20
    * | | * | | | | | | | | | | | | * | | :
    Sbjct:269TCTTTCTTCTCTCTCT-GTT251
    TGACAGAAGAGAGAGAGCAG
    psRobot
    AT4G03935
    25
    ath-miR156i
    2.8
    chr04:1869007-1869025|miR156i|chr04:1868942-186908
    AT4G03935
    -
    IntronR
    Query:1TGACAGAAGAGAGAGAGCAG20
    * | | * | | | | | | | | | | | | * | | :
    Sbjct:84TCTTTCTTCTCTCTCT-GTT66
    TGACAGAAGAGAGAGAGCAG
    psRobot
    AT4G03935
    26
    ath-miR156i
    2.8
    chr04:8433326-8433345|miR156i|chr04:8433194-843341
    AT4G14720
    -
    AltD
    Query:1TGACAGAAGAGAGAGAGCAG20
    | | | | | * | | | | : | | | : | | * | :
    Sbjct:152ACTGTATTCTTTCTTTCTTT133
    TGACAGAAGAGAGAGAGCAG
    psRobot
    AT4G14720|PPD2|TIFY4B|PEAPOD 2|DL3400C|FCAALL
    27
    ath-miR5636
    3.0
    chr01:19164589-19164609|miR5636|chr01:19164233-191
    AT1G51690
    +
    IntronR
    Query:1CGTAGTTGCAGAGCTTGACGG21
    * * | | | | | | | | | | | | | | * | * | |
    Sbjct:377AAATCAACGTCTCGAAATTCC357
    CGTAGTTGCAGAGCTTGACGG
    psRobot
    AT1G51690|ATB ALPHA|B ALPHA|protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform|F19C24
    28
    ath-miR1886.3
    0.8
    chr02:15611880-15611900|miR1886.3|chr02:15611820-1
    AT2G37160
    +
    ExonS
    Query:1AATTAAAGATTTCATCTTACT21
    | | | : | | | | | | | | | | | | | : | | |
    Sbjct:81TTAGTTTCTAAAGTAGAGTGA61
    AATTAAAGATTTCATCTTACT
    psRobot
    AT2G37160|T2N18
    29
    ath-miR840-3p
    3.0
    chr04:10150137-10150157|miR840-3p|chr04:10150134-1
    AT4G18370
    +
    AltA
    Query:1TTGTTTAGGTCCCTTAGTTTC21
    | * | | | : | * | | | | | | : | | | | | |
    Sbjct:24ATCAAGTGCAGGGAGTCAAAG4
    TTGTTTAGGTCCCTTAGTTTC
    psRobot
    AT4G18370|DEG5|DEGP5|HHOA|degradation of periplasmic proteins 5|DEGP PROTEASE 5|PROTEASE HHOA PRECUSOR|F28J12
    30
    ath-miR158a-3p
    3.0
    chr01:5942355-5942374|miR158a-3p|chr01:5942348-594
    AT1G17350
    +
    AltA
    Query:1TCCCAAATGTAGACAAAGCA20
    | | | | | * | | | * | : | | | | | | * |
    Sbjct:27AGGGTCTACTTTTGTTTCTT8
    TCCCAAATGTAGACAAAGCA
    psRobot
    AT1G17350|F28G4