1

sly-miR156e-3p

ch01:90949614-90949634

Solyc01g101100.2

sly_circ_000927 sly_circ_000926

-

A5BS

TGGGACAGCTAAAGCGTAAGC

GCTTACTCTCTATCTGTCACC

miRferno

Receptor-like protein kinase (Q9LYS5_ARATH)

2

sly-miR169e-5p

ch01:91737580-91737601

Solyc01g103050.2

sly_circ_000929 sly_circ_000093

+

A5BS

AAACTCAATTAACCCTTGGCTA

TAGCCAAGGATGACTTGCCTTT

miRferno

Auxin Response Factor 1 (manually curated)

3

sly-miR1916

ch04:63839231-63839250

Solyc04g079320.2

sly_circ_000518 sly_circ_000519

+

A3BS

TTGATGTGTTTATGTGACAA

ATTTCACTTAGACACCTCAA

miRferno

Uroporphyrinogen III synthase (B0FMS4_HORVU)

4

sly-miR394-5p

ch06:41604783-41604802

Solyc06g066320.2

sly_circ_000615 sly_circ_000616

-

A3BS

GAAGGTCCAAAGAATGCCGA

TTGGCATTCTGTCCACCTCC

miRferno

Transcription factor iws1 (B6K1U8_SCHJY)

5

sly-miR9472-5p

ch09:1503317-1503337

Solyc09g008020.2

sly_circ_000798 sly_circ_000799

+

A5BS

TAATCAATACCTCTACTGTAA

TTTCAGTAGACGTTGTGAATA

miRferno

Cysteine-type peptidase (B6T6Y3_MAIZE)

6

sly-miR5303

ch04:50612791-50612811

Solyc04g051490.2

sly_circ_000488 sly_circ_000489

-

A5BS

GTTGCTCGGACTCTCCAAAAT

TTTTTGAAGAGTTCGAGCAAC

miRferno

Essential meiotic endonuclease 1B (C5H8J1_ARATH)

7

sly-miR5303

ch04:50612791-50612811

Solyc04g051490.2

sly_circ_000490 sly_circ_000488

-

A5BS

GTTGCTCGGACTCTCCAAAAT

TTTTTGAAGAGTTCGAGCAAC

miRferno

Essential meiotic endonuclease 1B (C5H8J1_ARATH)

8

sly-miR5304

ch04:50611978-50611998

Solyc04g051490.2

sly_circ_000488 sly_circ_000489

-

A5BS

GGAGTGAGTATGTTGCTTTCA

TCAATGCTACATACTCATCCC

miRferno

Essential meiotic endonuclease 1B (C5H8J1_ARATH)

9

sly-miR5304

ch04:50611978-50611998

Solyc04g051490.2

sly_circ_000490 sly_circ_000488

-

A5BS

GGAGTGAGTATGTTGCTTTCA

TCAATGCTACATACTCATCCC

miRferno

Essential meiotic endonuclease 1B (C5H8J1_ARATH)

10

sly-miR482d-3p

ch04:50619825-50619846

Solyc04g051490.2

sly_circ_000488 sly_circ_000487

-

A3BS

TTGGGATGGAGGGAATAGTACA

TTTCCTATTCCACCCATGCCAA

miRferno

Essential meiotic endonuclease 1B (C5H8J1_ARATH)

11

sly-miR164b-3p

ch10:26427685-26427705

Solyc10g044450.1

sly_circ_000152 sly_circ_000151

+

A5BS

ATTGGGGAAGGAAAACCCGTG

CACGTGTTCTCCTTCTCCAAC

miRferno

Upf3 regulator of nonsense transcripts-like protein B (Q2F5U6_BOMMO)

12

sly-miR399

ch10:61969874-61969894

Solyc10g080770.1

sly_circ_000170 sly_circ_000171

+

A3BS

AAGAGCAACTGACCTTGGGCA

TGCCAAAGGAGAGTTGCCCTA

miRferno

NPR1-interactor protein 1 (manually curated)

13

sly-miR9469-5p

ch10:61970368-61970388

Solyc10g080770.1

sly_circ_000170 sly_circ_000171

+

A3BS

GAACTGGGTCTTCCTATTTGG

CCACATAAGAAGACCGAATTC

miRferno

NPR1-interactor protein 1 (manually curated)

14

sly-miR9476-3p

ch10:61969454-61969474

Solyc10g080770.1

sly_circ_000170 sly_circ_000171

+

A3BS

AGACTAGTCCTGAATGTTCTT

AAAAAGATGCAGGACTAGACC

miRferno

NPR1-interactor protein 1 (manually curated)