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Solanum lycopersicum alternative back-splicing

Total 2855 records in 96 Pages. Current page: 1
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  • Circ_regionGene_nameStrandTypeTissuesSoftwareCircular_IDExon_covermiR_tar_exonSequence Description
    Solyc01g096710.2
    -
    exonic
    fruit
    PcircRNA_finder
    Solyc01g096710.2.1_circ_g_3_2
    Solyc01g096710.2.1:exon5,exon4(YES;YES)
    NA
    Nuclear transcription factor Y subunit C-1 (B6SWV5_MAIZE)
    Solyc02g086160.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc02g086160.2.1_circ_g_2_3
    Solyc02g086160.2.1:exon2,exon3(YES;YES)
    NA
    plastidic glucose translocator 1 (manually curated)
    Solyc01g111630.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc01g111630.2.1_circ_g_2_3_4
    Solyc01g111630.2.1:exon2,exon3,exon4(YES;YES)
    NA
    Glyoxylate/hydroxypyruvate reductase B (GHRB_YERPS)
    Solyc01g111630.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc01g111630.2.1_circ_g_4
    Solyc01g111630.2.1:exon4(YES;YES)
    NA
    Glyoxylate/hydroxypyruvate reductase B (GHRB_YERPS)
    Solyc05g009160.2
    +
    exonic
    fruit
    CIRI
    sly_circ_000535
    Solyc05g009160.2.1:exon3,exon4,exon5,exon6(YES;YES)
    NA
    Chaperone protein dnaJ 15 (B4FR07_MAIZE)
    Solyc03g117320.2
    -
    exonic
    fruit
    PcircRNA_finder
    Solyc03g117320.2.1_circ_g_4_3
    Solyc03g117320.2.1:exon3,exon2(YES;YES)
    NA
    50S ribosomal protein L3-2 (B6TFD9_MAIZE)
    Solyc03g117970.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc03g117970.2.1_circ_g_3
    Solyc03g117970.2.1:exon3(YES;YES)
    NA
    Novel protein similar to vertebrate ADP-ribosyltransferase (NAD+ poly (ADP-ribose) polymerase) (ADPRT) (Q5RHR0_DANRE)
    Solyc02g031840.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc02g031840.2.1_circ_g_3_4
    Solyc02g031840.2.1:exon3,exon4(YES;YES)
    NA
    Potassium transporter (A9SMZ3_PHYPA)
    Solyc02g093410.2
    +
    exonic
    fruit
    CIRI
    sly_circ_000352
    Solyc02g093410.2.1:exon4,exon5(YES;YES)
    NA
    Protein kinase (Q7XJ65_CUCSA)
    Solyc03g116790.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc03g116790.2.1_circ_g_7_8
    Solyc03g116790.2.1:exon7,exon8(YES;YES)
    NA
    Chaperone protein dnaJ (B6TAJ2_MAIZE)
    Solyc04g064710.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc04g064710.2.1_circ_g_4
    Solyc04g064710.2.1:exon4(YES;YES)
    NA
    Alcohol dehydrogenase 2 (Q9FZ01_VITVI)
    Solyc06g008320.2
    -
    exonic
    fruit;fruit
    PcircRNA_finder;CIRI
    sly_circ_000581
    Solyc06g008320.2.1:exon9,exon8,exon7(YES;YES)
    NA
    Serine/threonine kinase (D8UCQ6_VOLCA)
    Solyc03g093160.2
    -
    exonic
    fruit
    PcircRNA_finder
    Solyc03g093160.2.1_circ_g_5_4
    Solyc03g093160.2.1:exon5,exon4(YES;YES)
    NA
    LUC7-like 2 (Q6NVN5_XENTR)
    Solyc02g020980.2
    -
    exonic
    fruit
    CIRI
    sly_circ_000293
    Solyc02g020980.2.1:exon21,exon20,exon19,exon18,exon17,exon16(YES;YES)
    NA
    4-alpha-glucanotransferase (Q6R608_SOLTU)
    Solyc01g006190.2
    -
    exonic
    fruit
    Segemehl, CIRI
    sly_circ_000859
    Solyc01g006190.2.1:exon3,exon2(YES;YES)
    NA
    E3 ubiquitin-protein ligase sina (B0WR23_CULQU)
    Solyc04g008010.2
    -
    exonic
    fruit
    PcircRNA_finder
    Solyc04g008010.2.1_circ_g_12_11_10
    Solyc04g008010.2.1:exon11,exon10,exon9(YES;YES)
    NA
    Protein VAC14 homolog (VAC14_XENLA)
    Solyc01g007140.2
    +
    exonic
    fruit
    Segemehl, CIRI
    sly_circ_000865
    Solyc01g007140.2.1:exon10,exon11,exon12,exon13,exon14(YES;YES)
    NA
    Pre-rRNA-processing protein ipi1 (B6K6C3_SCHJY)
    Solyc04g080130.2
    -
    exonic
    fruit
    Segemehl, CIRI
    sly_circ_001100
    Solyc04g080130.2.1:exon3,exon2(YES;YES)
    NA
    Zinc finger protein (Q9LVQ7_ARATH)
    Solyc04g080130.2
    -
    exonic
    fruit;fruit
    PcircRNA_finder;Segemehl, CIRI
    sly_circ_001101
    Solyc04g080130.2.1:exon2(YES;YES)
    NA
    Zinc finger protein (Q9LVQ7_ARATH)
    Solyc01g009010.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc01g009010.2.1_circ_g_2_3_4_5_6_7_8_9_10
    Solyc01g009010.2.1:exon2,exon3,exon4,exon5,exon6,exon7,exon8,exon9,exon10(YES;YES)
    sly-miR396a-5p,ch01:3016782-3016802|intron
    4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (manually curated)
    Solyc06g082220.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc06g082220.2.1_circ_g_2
    Solyc06g082220.2.1:exon2(YES;YES)
    NA
    HIV-1 Tat specific factor 1 (Fragment) (Q5H918_HUMAN)
    Solyc06g082220.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc06g082220.2.1_circ_g_4_5
    Solyc06g082220.2.1:exon4,exon5(YES;YES)
    NA
    HIV-1 Tat specific factor 1 (Fragment) (Q5H918_HUMAN)
    Solyc01g106360.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc01g106360.2.1_circ_g_8_9
    Solyc01g106360.2.1:exon8,exon9(YES;YES)
    NA
    Glutamyl-tRNA(Gln) amidotransferase subunit A (C5FFK2_NANOT)
    Solyc04g050240.2
    -
    exonic
    fruit
    PcircRNA_finder
    Solyc04g050240.2.1_circ_g_11_10_9_8_7_6
    Solyc04g050240.2.1:exon7,exon6,exon5,exon4,exon3,exon2(YES;YES)
    NA
    Vacuolar protein sorting-associated protein 26-like protein (Q3HRZ1_SOLTU)
    Solyc06g051390.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc06g051390.2.1_circ_g_5_6_7_8_9
    Solyc06g051390.2.1:5,6,7,8,9(YES;NO)
    NA
    Tomosyn-like protein (A9RPV0_PHYPA)
    Solyc04g050510.2
    -
    exonic
    fruit
    PcircRNA_finder
    Solyc04g050510.2.1_circ_g_5_4_3_2
    Solyc04g050510.2.1:exon33,exon32,exon31,exon30(YES;YES)
    NA
    Translational activator gcn1 (B0W357_CULQU)
    Solyc02g088630.2
    -
    exonic
    fruit;fruit
    PcircRNA_finder;Segemehl, CIRI
    sly_circ_000983
    Solyc02g088630.2.1:exon5,exon4(YES;YES)
    NA
    Glycosyltransferase (B9IK47_POPTR)
    Solyc03g007530.2
    +
    exonic
    fruit
    PcircRNA_finder
    Solyc03g007530.2.1_circ_g_9
    Solyc03g007530.2.1:exon9(YES;YES)
    NA
    Multidrug resistance protein ABC transporter family (B9GX56_POPTR)
    Solyc05g007990.2
    -
    exonic
    fruit;fruit
    PcircRNA_finder;Segemehl, CIRI
    sly_circ_000531
    Solyc05g007990.2.1:exon9,exon8(YES;YES)
    NA
    Uridine kinase (C3SA58_BRADI)
    Solyc05g007990.2
    -
    exonic
    fruit;fruit
    PcircRNA_finder;CIRI
    sly_circ_000532
    Solyc05g007990.2.1:exon6,exon5(YES;YES)
    NA
    Uridine kinase (C3SA58_BRADI)