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Glycine max alternative back-splicing

Total 5341 records in 179 Pages. Current page: 1
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  • Circ_regionGene_nameStrandTypeTissuesSoftwareCircular_IDExon_covermiR_tar_exonSequence Description
    GLYMA10G42940
    +
    exonic
    leaves
    PcircRNA_finder
    GLYMA10G42940.4_circ_g_2_3_4
    GLYMA10G42940.4:exon2,exon3,exon4(YES;YES)||GLYMA10G42940.5:exon2,exon3,exon4(YES;YES)
    NA
    vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative
    GLYMA10G42940
    +
    exonic
    root
    Tophat
    gma_circ_002819
    GLYMA10G42940.4:exon10,exon11(YES;YES)||GLYMA10G42940.5:exon10,exon11(YES;YES)||GLYMA10G42940.6:exon10,exon11(YES;YES)
    NA
    vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative
    GLYMA10G42940
    +
    exonic
    root
    Tophat
    gma_circ_002820
    GLYMA10G42940.4:exon11,exon12,exon13,exon14(YES;YES)||GLYMA10G42940.5:exon11,exon12,exon13,exon14(YES;YES)||GLYMA10G42940.6:exon11,exon12,exon13,exon14(YES;YES)
    NA
    vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative
    GLYMA11G00640
    +
    exonic
    stem
    Tophat
    gma_circ_002864
    GLYMA11G00640.1:exon2,exon3,exon4,exon5,exon6,exon7,exon8,exon9(YES;YES)
    gma-miR1507c-5p,chr11:301650-301630|GLYMA11G00640.1:exon_9;gma-miR1507c-5p,chr11:301650-301630|GLYMA11G00640.2:exon_8
    ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding
    GLYMA11G00640
    +
    exonic
    stem
    Tophat
    gma_circ_002865
    GLYMA11G00640.1:exon9,exon10(YES;YES)||GLYMA11G00640.2:exon8,exon9(YES;YES)
    gma-miR156t;gma-miR156p,chr11:301778-301798|intron
    ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding
    GLYMA15G43210
    -
    exonic
    leaves
    PcircRNA_finder
    GLYMA15G43210.3_circ_g_5
    GLYMA15G43210.3:5||GLYMA15G43210.4:5(NO;YES)
    NA
    amine oxidase/ copper ion binding / quinone binding
    GLYMA11G35570
    -
    exonic
    stem
    Tophat, CIRI
    gma_circ_003128
    GLYMA11G35570.1:exon8,exon7(YES;YES)
    NA
    MRH1 (morphogenesis of root hair 1); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase
    GLYMA16G09320
    -
    exonic
    leaf, root
    Tophat, CIRI
    gma_circ_004292
    GLYMA16G09320.2:exon10,exon9(YES;YES)||GLYMA16G09320.1:exon11,exon10(YES;YES)||GLYMA16G09320.3:exon11,exon10(YES;YES)
    NA
    scpl20 (serine carboxypeptidase-like 20); serine-type carboxypeptidase
    GLYMA17G16930
    -
    exonic
    leaves
    PcircRNA_finder
    GLYMA17G16930.1_circ_g_2
    GLYMA17G16930.1:2(NO;YES)
    NA
    HAT22; transcription factor
    GLYMA13G16040
    -
    intronic
    root
    Tophat
    gma_circ_003472
    0
    NA
    UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease
    GLYMA13G16040
    -
    exonic
    stem
    Tophat, CIRI
    gma_circ_003473
    GLYMA13G16040.2:exon10,exon9,exon8,exon7,exon6(YES;YES)
    NA
    UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease
    GLYMA13G16040
    -
    exonic
    leaf, root, stem
    Tophat
    gma_circ_003474
    GLYMA13G16040.2:exon4,exon3,exon2(YES;YES)
    NA
    UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease
    GLYMA11G37590
    +
    intronic
    stem
    Tophat
    gma_circ_003156
    0
    NA
    ALB4 (ALBINA 4)
    GLYMA10G42810
    -
    intronic
    root
    Tophat
    gma_circ_002818
    0
    NA
    GCIP-interacting family protein
    GLYMA11G27120
    +
    intronic
    stem
    Tophat
    gma_circ_003097
    0
    NA
    heat shock protein-related
    GLYMA16G18440
    -
    exonic
    leaves
    PcircRNA_finder
    GLYMA16G18440.1_circ_g_5_4
    GLYMA16G18440.1:5,4||GLYMA16G18440.2:5,4(NO;NO)
    NA
    sterile alpha motif (SAM) domain-containing protein
    GLYMA10G34580
    +
    intronic
    root
    Tophat
    gma_circ_002725
    0
    NA
    OTU-like cysteine protease family protein
    GLYMA12G32580
    +
    exonic
    leaves
    PcircRNA_finder
    GLYMA12G32580.1_circ_g_3
    GLYMA12G32580.1:3(NO;NO)
    NA
    PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C); electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II
    GLYMA11G04430
    +
    exonic
    root
    Tophat
    gma_circ_002929
    GLYMA11G04430.4:exon2,exon3,exon4,exon5,exon6,exon7,exon8,exon9(YES;YES)||GLYMA11G04430.5:exon2,exon3,exon4,exon5,exon6,exon7,exon8,exon9(YES;YES)||GLYMA11G04430.2:exon2,exon3,exon4,exon5,exon6,exon7,exon8,exon9(YES;YES)
    NA
    unknown protein
    GLYMA13G17440
    +
    exonic
    stem
    Tophat
    gma_circ_003489
    GLYMA13G17440.1:exon2,exon3,exon4,exon5,exon6,exon7,exon8,exon9(YES;YES)
    NA
    TES (TETRASPORE); microtubule motor
    GLYMA10G43430
    -
    exonic
    root
    Tophat
    gma_circ_002832
    GLYMA10G43430.1:exon3,exon2(YES;YES)
    NA
    SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein
    GLYMA15G42430
    -
    exonic
    root
    Tophat
    gma_circ_004182
    GLYMA15G42430.1:exon4,exon3,exon2(YES;YES)
    NA
    NRPB8B; DNA-directed RNA polymerase
    GLYMA12G04120
    -
    exonic
    root
    Tophat
    gma_circ_003214
    GLYMA12G04120.3:exon13(YES;YES)
    NA
    kinesin motor family protein
    GLYMA12G04120
    -
    exonic
    stem
    Tophat
    gma_circ_003215
    GLYMA12G04120.2:exon9,exon8,exon7,exon6,exon5,exon4,exon3,exon2(YES;YES)||GLYMA12G04120.3:exon9,exon8,exon7,exon6,exon5,exon4,exon3,exon2(YES;YES)
    gma-miR2606a;gma-miR2606b,chr12:2690416-2690397|GLYMA12G04120.2:exon_5;gma-miR2606a;gma-miR2606b,chr12:2690416-2690397|GLYMA12G04120.3:exon_5
    kinesin motor family protein
    GLYMA17G18400
    +
    exonic
    root
    Tophat
    gma_circ_004528
    GLYMA17G18400.1:exon3,exon4,exon5,exon6(YES;YES)
    NA
    SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid binding
    GLYMA17G18400
    +
    exonic
    root
    Tophat
    gma_circ_004529
    GLYMA17G18400.1:exon5,exon6(YES;YES)
    NA
    SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid binding
    GLYMA12G36950
    +
    exonic
    leaves
    PcircRNA_finder
    GLYMA12G36950.1_circ_g_5_6_7
    GLYMA12G36950.1:exon5,exon6,exon7(YES;YES)
    NA
    emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding
    GLYMA13G44690
    +
    intronic
    root
    Tophat
    gma_circ_003729
    0
    NA
    40S ribosomal protein S12 (RPS12C)
    GLYMA12G33360
    +
    intronic
    root
    Tophat
    gma_circ_003354
    0
    gma-miR167e;gma-miR167f,chr12:36675124-36675144|intron
    reticulon family protein
    GLYMA12G31740
    +
    intronic
    root
    Tophat
    gma_circ_003343
    0
    NA
    unknown protein