1

AT1G34780

-

ExonS

chr01:12749838-12749935;chr01:12749737-12749837;chr01:12749567-12749736

overlap(sense)

AT1G34780|ATAPRL4|APRL4|APR-like 4|F11O6

Illumina

Eucgr.F00332 GLYMA04G10990 LOC_Os02g51850 MA_63370g0010 PH01001997G0240 Potri.005G164200 Sb04g027510 Solyc04g074240.2

2

AT1G34780

-

AltD

chr01:12749567-12749649;chr01:12749650-12749735;chr01:12749737-12749837

overlap(sense)

AT1G34780|ATAPRL4|APRL4|APR-like 4|F11O6

Illumina

Eucgr.F00332 GLYMA04G10990 LOC_Os02g51850 MA_63370g0010 PH01001997G0240 Potri.005G164200 Sb04g027510 Solyc04g074240.2

3

AT2G35140

+

ExonS

chr02:14813490-14813620;chr02:14813622-14813686;chr02:14813687-14813973

overlap(sense)

AT2G35140|T4C15

Illumina

LOC_Os09g39020 PH01000885G0050 Potri.015G122300 Sb02g011270 Sb10g024460 Solyc02g068780.2

4

AT1G35250

-

IntronR

chr01:12933094-12933165;chr01:12932590-12933093;chr01:12932290-12932589

overlap(sense)

AT1G35250|ALT2|acyl-lipid thioesterase 2|T9I1

Illumina

Eucgr.B03007 GLYMA01G19200 LOC_Os04g46730 MA_10436714g0010 PH01001692G0270 Potri.010G123100 Sb06g024720 Solyc04g007190.2 Zm00001d002727

5

AT3G14210

+

AltA

chr03:4730290-4730384;chr03:4730263-4730289;chr03:4730148-4730289

overlap(sense)

AT3G14210|ESM1|epithiospecifier modifier 1|MAG2

Illumina

--NA--

6

AT4G04320

+

IntronR

chr04:2113882-2113964;chr04:2113965-2114035;chr04:2114036-2114093

overlap(sense)

AT4G04320|T19B17

Illumina

Eucgr.E03992 GLYMA09G00960 GLYMA15G11810 LOC_Os09g23070 PH01001676G0170 PITA_000074183-RA Potri.004G005500 Potri.011G010400 Sb02g024040 Zm00001d005711

7

AT2G47250

-

AltA

chr02:19400691-19400816;chr02:19400817-19401016;chr02:19400817-19401239

overlap(sense)

AT2G47250|T8I13

Illumina

Eucgr.H00916 GLYMA02G01390 GLYMA03G37980 GLYMA19G40600 LOC_Os03g19960 MA_34468g0010 PH01000013G1020 Potri.002G192500 Sb01g037170 Solyc01g079250.2 Zm00001d028923 Zm00001d047601

8

AT3G14570

+

AltA

chr03:4893453-4893487;chr03:4893400-4893452;chr03:4893324-4893452

overlap(sense)

AT3G14570|ATGSL04|gsl04|atgsl4|GSL4|glucan synthase-like 4|MIE1

Illumina

Eucgr.F01403 GLYMA13G33560 GLYMA15G39420 PITA_000008226-RA Potri.011G095100 Solyc07g061920.2

9

AT5G47910

+

ExonS

chr05:19398710-19399061;chr05:19399063-19399215;chr05:19399216-19399608

overlap(sense)

AT5G47910|RBOHD|ATRBOHD|respiratory burst oxidase homologue D|MCA23

Illumina

Eucgr.J01662 GLYMA04G38040 GLYMA05G33280 GLYMA06G17030 GLYMA08G00880 LOC_Os11g33120 MA_107643g0010 PH01000596G0230 PITA_000085516-RA Potri.001G070900 Potri.003G159800 Sb05g020380 Solyc03g117980.2 Zm00001d007421 Zm00001d007426 Zm00001d052653

10

AT2G22980

+

ExonS

chr02:9781238-9782046;chr02:9782048-9782169;chr02:9782170-9782627

overlap(sense)

AT2G22980|SCPL13|serine carboxypeptidase-like 13|T20K9

Illumina

Eucgr.F02236 GLYMA06G05020 LOC_Os10g01134 MA_10431002g0010 PH01001417G0310 Potri.013G124900 Sb01g027540 Solyc05g050780.2 Zm00001d030172

11

AT5G06865

+

AltA

chr05:2133051-2133126;chr05:2132995-2133050;chr05:2132914-2133050

overlap(antisense)

AT5G06865

Illumina

--NA--

12

AT2G39020

+

IntronR

chr02:16295138-16295593;chr02:16295594-16296018;chr02:16296019-16296337

overlap(sense)

AT2G39020|NATA2|T7F6

Illumina

GLYMA10G15250 LOC_Os03g05710 MA_90403g0010 PH01000705G0730 PITA_000018981-RA Potri.010G224800 Sb01g046860 Solyc10g084640.1 Zm00001d048407

13

AT1G10540

-

AltD

chr01:3476897-3476986;chr01:3476987-3477055;chr01:3477057-3477087

overlap(sense)

AT1G10540|ATNAT8|NAT8|nucleobase-ascorbate transporter 8|T10O24

Illumina

MA_76962g0010 PITA_000056856-RA

14

AT2G32320

+

AltD

chr02:13729332-13729566;chr02:13729243-13729331;chr02:13729099-13729242

overlap(sense)

AT2G32320|T32F6

Illumina

Eucgr.H04885 GLYMA10G00420 LOC_Os05g45890 PH01000502G0210 Potri.002G233300 Solyc04g051600.2 Zm00001d038829

15

AT3G29390

+

AltA

chr03:11291929-11291988;chr03:11291895-11291928;chr03:11291635-11291928

overlap(sense)

AT3G29390|RIK|RS2-interacting KH protein|MUO10

Illumina

Eucgr.J01380 GLYMA08G26890 GLYMA18G50140 LOC_Os03g11520 PH01000106G0400 PH01000531G0720 Potri.017G093600 Sb01g042920 Solyc02g066940.2 Zm00001d028208

16

AT1G73280

-

ExonS

chr01:27553595-27553666;chr01:27553458-27553594;chr01:27553381-27553457

overlap(sense)

AT1G73280|scpl3|serine carboxypeptidase-like 3|T18K17

Illumina

Eucgr.F02236 GLYMA03G17920 LOC_Os04g09720 MA_10431002g0010 PH01001417G0030 Potri.013G124900 Sb01g027570 Solyc04g077640.2 Zm00001d014443

17

AT1G01760

-

AltD

chr01:276520-276607;chr01:276608-276704;chr01:276706-276793

overlap(sense)

AT1G01760|TAD1|AtTAD1|ortholog of yeast Tad1|T1N6

Illumina

Eucgr.E00169 Eucgr.E00173 GLYMA03G01570 GLYMA07G07991 LOC_Os04g58690 PH01000438G0830 Potri.014G081400 Sb06g031520 Solyc05g048810.2 Zm00001d001987 Zm00001d025192

18

AT3G01590

+

AltD

chr03:226789-226956;chr03:226725-226788;chr03:226578-226724

overlap(sense)

AT3G01590|F4P13

Illumina

Eucgr.I01737 GLYMA19G00600 PITA_000033270-RA Solyc02g067860.2

19

AT5G44580

+

AltD

chr05:17979445-17979628;chr05:17979388-17979444;chr05:17979167-17979387

overlap(sense)

AT5G44580|K15C23

Illumina

--NA--

20

AT1G73177

-

AltA

chr01:27517277-27517362;chr01:27517363-27517388;chr01:27517363-27517799

overlap(sense)

AT1G73177|BNS|APC13|BONSAI|anaphase-promoting complex 13

Illumina

GLYMA03G38540 GLYMA19G41141 Potri.004G058400 Potri.011G067800 Sb02g040400

21

AT4G25290

-

ExonS

chr04:12944665-12944771;chr04:12944630-12944664;chr04:12944548-12944629

overlap(sense)

AT4G25290|F24A6

Illumina

Eucgr.K00151 GLYMA09G36480 LOC_Os09g36240 MA_10435690g0010 PH01000060G0860 Potri.015G129500 Sb02g030890 Zm00001d021295

22

AT4G25290

-

AltA

chr04:12943571-12943871;chr04:12943872-12943899;chr04:12943872-12943984

overlap(sense)

AT4G25290|F24A6

Illumina

Eucgr.K00151 GLYMA09G36480 LOC_Os09g36240 MA_10435690g0010 PH01000060G0860 Potri.015G129500 Sb02g030890 Zm00001d021295

23

AT2G46560

-

IntronR

chr02:19117286-19117573;chr02:19117194-19117285;chr02:19117036-19117193

overlap(sense)

AT2G46560|F13A10

Illumina

Eucgr.E00041 GLYMA07G06025 GLYMA16G02620 PH01001166G0460 Potri.002G173300 Solyc01g096110.2 Zm00001d011140

24

AT5G06350

+

AltD

chr05:1942331-1942478;chr05:1942305-1942330;chr05:1942208-1942304

overlap(sense)

AT5G06350|MHF15

Illumina

Eucgr.E01507 GLYMA16G19251 LOC_Os04g39220 PH01000041G0960 Potri.001G208900 Sb06g019380 Solyc01g007140.2 Zm00001d003372

25

AT1G48160

-

AltA

chr01:17788110-17788210;chr01:17788211-17788286;chr01:17788211-17788558

overlap(sense)

AT1G48160|F21D18

Illumina

GLYMA02G07200 GLYMA16G26150 LOC_Os06g23430 PH01000033G0230 Potri.012G045500 Potri.015G036700 Sb06g018340 Solyc08g082740.2 Zm00001d001882 Zm00001d003502

26

AT5G19740

+

AltD

chr05:6675618-6675696;chr05:6675541-6675617;chr05:6675465-6675540

overlap(sense)

AT5G19740|LAMP1|LIKE AMP 1|T29J13

Illumina

Eucgr.C03720 GLYMA01G01000 LOC_Os01g53810 LOC_Os01g54010 MA_12996g0010 PH01000252G0710 PH01000627G0380 PITA_000082676-RA Potri.006G153300 Sb03g034150 Sb03g034260 Zm00001d012765 Zm00001d043517 Zm00001d043519

27

AT3G52730

-

ExonS

chr03:19543747-19544047;chr03:19543699-19543746;chr03:19543197-19543698

overlap(sense)

AT3G52730|F3C22

Illumina

Eucgr.K02043 GLYMA03G35340 GLYMA13G22086 GLYMA19G37961 LOC_Os05g33210 PH01000011G1730 PH01003188G0060 Potri.004G188700 Sb05g002090 Solyc11g068400.1 Zm00001d004997 Zm00001d052436

28

AT1G78730

-

IntronR

chr01:29608014-29608112;chr01:29607922-29608013;chr01:29607719-29607921

overlap(sense)

AT1G78730|F9K20

Illumina

Eucgr.E04101 GLYMA13G43041 LOC_Os04g35940 LOC_Os10g03620 LOC_Os10g03740 LOC_Os10g03850 LOC_Os10g03870 LOC_Os10g03930 PH01000014G1270 Potri.011G121500 Sb04g005800 Solyc02g092290.2 Zm00001d043400

29

AT2G35630

+

AltA

chr02:14976278-14976460;chr02:14976225-14976277;chr02:14976147-14976277

overlap(sense)

AT2G35630|MOR1|GEM1|MICROTUBULE ORGANIZATION 1|T20F21

Illumina

Eucgr.D00655 GLYMA10G35140 GLYMA20G32430 PH01000009G0970 Potri.001G443200 Potri.011G153700 Sb03g037950 Solyc02g078640.2 Zm00001d012525 Zm00001d043093

30

AT4G30690

+

IntronR

chr04:14961361-14961413;chr04:14961414-14961508;chr04:14961509-14961607

overlap(sense)

AT4G30690|AtINFC-4|AtIF3- 4|SVR9L|Initiation factor 3-4|SVR9-LIKE1|T10C21

Illumina

Eucgr.C02505 GLYMA02G36710 LOC_Os02g55120 PH01000026G0400 Potri.018G104000 Sb04g035750 Solyc07g005830.2 Zm00001d018366