Welcome to Lianfeng Gu's Lab

Welcome to Lianfeng Gu's Lab
Welcome to Lianfeng Gu's Lab

Identification of alternative splicing using PacBio/Nanopore

  • We are pleasure to release out first version of PRAPI, which is one-stop solution for Iso-Seq analysis of analyze alternative transcription initiation (ATI), alternative splicing (AS), alternative cleavage and polyadenylation (APA), natural antisense transcripts (NAT), and circular RNAs (circRNAs) comprehensively. We also developed methods to identify differential AS events for species without reference genome.

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  • The function of circular RNA

  • We used circular RNA sequencing to identify the function of circular RNA in plant. We recently started to performance molecular experiment to investigate circular RNA on gene expression and post-transcription regulation.

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Database

ASmiR databases

We are pleasure to release out first version of ASmiRdb: the interplay between miRNA and alternative splicing in plant. The database was accompanied by easy-to-use web query interfaces for data visualization and downstream analysis. Especially, the forest genomics community also can submit own dataset to the web service to search for the small RNA target sites locating at AS region.

Software

We are pleasure to release out first version of PRAPI, which a one-stop solution for Iso-Seq analysis of analyze alternative transcription initiation (ATI), alternative splicing (AS), alternative cleavage and polyadenylation (APA), natural antisense transcripts (NAT), and circular RNAs (circRNAs) comprehensively.